Uridine Phosphoramidite
From: 260 € plus VAT, plus delivery
Synonyms: 5′-O-DMT-2′-O-TBDMS-Uridin-3′-CE phosphoramidite, DMT-2’O-TBDMS-rU Amidite
Available in various isotopic labelings and/or quantities.
Description
Detailed notation: 5′-O-(4,4′-dimethoxytrityl)-2′-O-(tert-butyldimethylsilyl)-Uridin-3′-[(2-cyanoethyl)-(N,N-diisopropyl)]-phosphoramidite
– This product is in powder form
– Isotopic enrichment for all labelings except for U-2H: > 98 atom %
– Isotopic enrichment for U-2H: > 96 atom %
– Chemical purity > 95 %
Packed in ND 20 crimp neck bottles. Configured for ABI.
References
References | Use cases of the Silantes NTPs in scientific publications: โข Mieczkowski, M., Steinmetzger, C., Bessi, I., Lenz, A., Schmiedel, A., Holzapfel, M., Lambert, C., Pena, V., & Hรถbartner, C. (2021). Large Stokes shift fluorescence activation in an RNA aptamer by intermolecular proton transfer to guanine. Nature Communications, 12(1). https://doi.org/10.1038/s41467-021-23932-0 โข Musheev, M. U., Schomacher, L., Basu, A., Han, D., Krebs, L., Scholz, C., & Niehrs, C. (2022). Mammalian N1-adenosine PARylation is a reversible DNA modification. Nature Communications, 13(1). https://doi.org/10.1038/s41467-022-33731-w โข Xu, Y., McSally, J., Andricioaei, I., & Al-Hashimi, H. M. (2018). Modulation of Hoogsteen dynamics on DNA recognition. Nature Communications, 9(1). https://doi.org/10.1038/s41467-018-03516-1 โข Li, M., Wang, Y., Wei, X., Cai, W., Wu, J., Zhu, M., Wang, Y., Liu, Y., Xiong, J., Qu, Q., Chen, Y., Tian, X., Yao, L., Xie, R., Li, X., Chen, S., Huang, X., Zhang, C., Xie, C., . . . Lin, S. (2024). AMPK targets PDZD8 to trigger carbon source shift from glucose to glutamine. Cell Research. https://doi.org/10.1038/s41422-024-00985-6 โข Cromsigt, J., Schleucher, J., Gustafsson, T., Kihlberg, J., & Wijmenga, S. (2002). Preparation of partially 2H/13C-labelled RNA for NMR studies. Stereo-specific deuteration of the H5โโ in nucleotides. Nucleic Acids Research, 30(7), 1639โ1645. https://doi.org/10.1093/nar/30.7.1639 โข Rangadurai, A., Szymanski, E. S., Kimsey, I., Shi, H., & Al-Hashimi, H. M. (2020). Probing conformational transitions towards mutagenic WatsonโCrick-like GยทT mismatches using off-resonance sugar carbon R1ฯ relaxation dispersion. Journal of Biomolecular NMR, 74(8โ9), 457โ471. https://doi.org/10.1007/s10858-020-00337-7 โข Noeske, J., Richter, C., Grundl, M. A., Nasiri, H. R., Schwalbe, H., & Wรถhnert, J. (2005). An intermolecular base triple as the basis of ligand specificity and affinity in the guanine- and adenine-sensing riboswitch RNAs. Proceedings of the National Academy of Sciences, 102(5), 1372โ1377. https://doi.org/10.1073/pnas.0406347102 โข Ohira, T., Minowa, K., Sugiyama, K., Yamashita, S., Sakaguchi, Y., Miyauchi, K., Noguchi, R., Kaneko, A., Orita, I., Fukui, T., Tomita, K., & Suzuki, T. (2022). Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance. Nature, 605(7909), 372โ379. https://doi.org/10.1038/s41586-022-04677-2 โข Vรถgele, J., Duchardt-Ferner, E., Bains, J. K., Knezic, B., Wacker, A., Sich, C., Weigand, J. E., ล poner, J., Schwalbe, H., Krepl, M., & Wรถhnert, J. (2024). Structure of an internal loop motif with three consecutive UโขU mismatches from stemโloop 1 in the 3โฒ-UTR of the SARS-CoV-2 genomic RNA. Nucleic Acids Research, 52(11), 6687โ6706. https://doi.org/10.1093/nar/gkae349 โข Broft, P., Rosenkranz, R. R., Schleiff, E., Hengesbach, M., & Schwalbe, H. (2022). Structural analysis of temperature-dependent alternative splicing of HsfA2 pre-mRNA from tomato plants. RNA Biology, 19(1), 266โ278. https://doi.org/10.1080/15476286.2021.2024034 Use cases of the Silantes phosphoramidites in scientific publications: โข Becette, O., Olenginski, L. T., & Dayie, T. K. (2019). Solid-Phase chemical synthesis of stable Isotope-Labeled RNA to aid structure and dynamics studies by NMR spectroscopy. Molecules, 24(19), 3476. https://doi.org/10.3390/molecules24193476 โข ล tih, V., Amenitsch, H., Plavec, J., & Podbevลกek, P. (2023). Spatial arrangement of functional domains in OxyS stress response sRNA. RNA, 29(10), 1520โ1534. https://doi.org/10.1261/rna.079618.123 Use cases of the Silantes oligonucleotide synthesis service in scientific publications: โข Belfetmi, A., Zargarian, L., Tisnรฉ, C., Sleiman, D., Morellet, N., Lescop, E., Maskri, O., Renรฉ, B., Mรฉly, Y., Fosse, P., & Mauffret, O. (2016). Insights into the mechanisms of RNA secondary structure destabilization by the HIV-1 nucleocapsid protein. RNA, 22(4), 506โ517. https://doi.org/10.1261/rna.054445.115 โข Borggrรคfe, J., Victor, J., Rosenbach, H., Viegas, A., Gertzen, C. G. W., Wuebben, C., โฆ Etzkorn, M. (2021). Time-resolved structural analysis of an RNA-cleaving DNA catalyst. Nature, 601(7891), 144โ149. https://doi.org/10.1038/s41586-021-04225-4 โข Chernatynskaya, A. V., Deleeuw, L., Trent, J. O., Brown, T., & Lane, A. N. (2009). Structural analysis of the DNA target site and its interaction with Mbp1. Organic & Biomolecular Chemistry, 7(23), 4981. https://doi.org/10.1039/b912309a โข Van Melckebeke, H., Devany, M., Di Primo, C., Beaurain, F., Toulmรฉ, J., Bryce, D. L., & Boisbouvier, J. (2008). Liquid-crystal NMR structure of HIV TAR RNA bound to its SELEX RNA aptamer reveals the origins of the high stability of the complex. Proceedings of the National Academy of Sciences, 105(27), 9210โ9215. https://doi.org/10.1073/pnas.0712121105 Use cases of the Silantes 14-mer RNA Standard in scientific publications: โข Duchardt, E., & Schwalbe, H. (2005). Residue Specific Ribose and Nucleobase Dynamics of the cUUCGg RNA Tetraloop Motif by MNMR 13C Relaxation. Journal of Biomolecular NMR, 32(4), 295โ308. https://doi.org/10.1007/s10858-005-0659-x โข Hartlmรผller, C., Gรผnther, J. C., Wolter, A. C., Wรถhnert, J., Sattler, M., & Madl, T. (2017). RNA structure refinement using NMR solvent accessibility data. Scientific Reports, 7(1). https://doi.org/10.1038/s41598-017-05821-z โข Nozinovic, S., Fรผrtig, B., Jonker, H. R. A., Richter, C., & Schwalbe, H. (2009). High-resolution NMR structure of an RNA model system: the 14-mer cUUCGg tetraloop hairpin RNA. Nucleic Acids Research, 38(2), 683โ694. https://doi.org/10.1093/nar/gkp956 โข Richter, C., Kovacs, H., Buck, J., Wacker, A., Fรผrtig, B., Bermel, W., & Schwalbe, H. (2010). 13C-direct detected NMR experiments for the sequential J-based resonance assignment of RNA oligonucleotides. Journal of Biomolecular NMR, 47(4), 259โ269. https://doi.org/10.1007/s10858-010-9429-5 โข Ferner, J., Villa, A., Duchardt, E., Widjajakusuma, E., Wรถhnert, J., Stock, G., & Schwalbe, H. (2008). NMR and MD studies of the temperature-dependent dynamics of RNA YNMG-tetraloops. Nucleic Acids Research, 36(6), 1928โ1940. https://doi.org/10.1093/nar/gkm1183 Relevant blog articles: โข What Are Stable-Isotope Labeled Nucleic Acids?: https://silantes.com/stable-isotope-labeled-nucleic-acids/ โข Synthesizing Stable Isotope-Labeled Nucleic Acids: https://silantes.com/synthesizing-stable-isotope-labeled-nucleic-acids/ โข The Advantages of Using Stable Isotope-Labeled Nucleic Acids: https://silantes.com/advantages-stable-isotope-labeled-nucleic-acids/ โข Applications of Stable Isotope-Labeled Molecules: Exploring the Power of Isotopic Tracers: https://silantes.com/applications-stable-isotope-labeled-molecules/ โข Custom RNA & DNA Synthesis Services: Tailored Solutions for Your Nucleic Acid Needs: https://silantes.com/custom-dna-rna-synthesis/ Relevant webinars: โข Easy 13C, 15N-Labeling of DNA through isothermal amplification: Applications to G-quadruplex, aptamer, and DNAzyme: https://www.youtube.com/watch?v=HDOHcVhjZro |
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